Post - planktonsdm 0.0.7 documentation

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# Post

Used for post-processing

class post.post(model_config)

  Post processing of SDM

  cwm(variable)

    Calculate community weighted mean values for a given parameter.

    Parameters:

      variable (string) – variable that is used to estimate cwm.

  def_groups(dict)

    Define groups of species

    Parameters:

      - dict (dictionary) –

      - definitions (A dictionary containing group) –

  estimate_carbon(variable)

    Estimate carbon content for each species

    Parameters:

      variable (string) – carbon content to estimate

  export_ds(file_name)

    Export processed dataset to netcdf.

    Parameters:

      file_name (name netcdf will be saved as.) –

    Notes

    data export location is defined in the model_config.yml

  merge_env()

    Merge model output with environmental data

  merge_performance()
  return_d()
  richness(metric)
  total()

    Calculate total

    Notes

    Total is estimated based on the species list defined in model_config. Other species or groupings are excluded from the summation.